This thesis presents cache oblivious algorithms that use asymptotically optimal amounts of work, and move data asymptotically optimally among multiple levels of cache. Traditional blocked algorithms need to be tuned to each processor, but the discovery of cacheoblivious algorithms give developers new tools to tackle this emerging challenge. Hubert chan yue guo yweikai lin elaine shiy abstract although externalmemory sorting has been a classical algorithms abstraction and has been heavily studied in the literature, perhaps somewhat surprisingly, when dataobliviousness is a. Cacheoblivious data structures developing for developers. We present such an algorithm, which works on general rectangular matrices, in section 2. Nevertheless, these algorithms use an optimal amount of work. Our results close the performance gap between the currently best cacheaware algorithms for these problems and their cacheoblivious counterparts. The cache oblivious model is a simple and elegant model to design algorithms that perform well in hierarchical memory models ubiquitous on current systems. Our results close the performance gap between the currently best cache aware algorithms for these problems and their cache oblivious counterparts. Abstract this thesis presents cache oblivious algorithms that use asymptotically optimal. Mar 04, 2016 in this lecture, professor demaine continues with cache oblivious algorithms, including their applications in searching and sorting. Cacheoblivious algorithms and data structures department of. The goal of cacheoblivious algorithms is to reduce the amount of such tuning that is required. What are examples of cacheoblivious data structures and.
In this lecture, professor demaine continues with cacheoblivious algorithms, including their applications in searching and sorting. These models do indeed express more accurately the cost of algorithms on real machines than does the standard ram model. Readme for the source code distribution available with the engineering cache oblivious sorting algorithms submission to acm jea. Algorithms that do well in these models are often referred to as cache or io efficient. This paper gives an overview of the results achieved on cache oblivious algorithms and data structures since the seminal paper by frigo et al. Cacheoblivious algorithms perform well on a multilevel memory. Recent surveys on cacheoblivious algorithms and data structures can also be found in,38,50. Algorithms developed for these earlier models are perforce cacheaware. Low depth cacheoblivious algorithms cmu school of computer. The cache complexity of multithreaded cache oblivious algorithms matteo frigo and volker strumpen. This book provides a comprehensive introduction to the modern study of computer algorithms. Citeseerx document details isaac councill, lee giles, pradeep teregowda.
Discussion what is the range of cacheoblivious algorithms. Cacheoblivious algorithms a matteo frigo charles e. Eventually, one reaches a subproblem size that fits into cache, regardless of the cache size. We describe several cacheoblivious algorithms with optimal work, polylogarithmic depth, and sequential cache complexities that match. Scribd is the worlds largest social reading and publishing site. In this talk you will learn about the external memory model, the cacheoblivious model, and how to use these tools to create faster, scalable algorithms.
The problems of computing a matrix transpose and of performing an fft also succumb to remarkably simple algorithms, which are described in section 3. The cache complexity of multithreaded cache oblivious algorithms. Engineering a cacheoblivious sorting algorithm 3 fig. Prior cacheoblivious algorithms with optimal cache complexity 19, 20, 21, 27, 29 have. Lecture 6 i\o model 15853 algorithms in the real world. A typical workstation a trivial program memory models io model ideal cache model basic cacheoblivious algorithms matrix multiplication search trees sorting.
The idea behind cacheoblivious algorithms is efficient usage of processor caches and reduction of memory bandwidth requirements. Our cacheoblivious algorithms achieve the same asymptotic optimality. This thesis presents cacheoblivious algorithms that use asymptotically optimal amounts of work, and move data asymptotically optimally among multiple levels of. A typical workstation a trivial program memory models io model ideal cache model basic cacheoblivious algorithms matrix multiplication search trees sorting some experimental results.
The theory of cache efficient algorithms is now well developed see, for example, the surveys 3, 6, 12, 17, 19, 23. We study the cache oblivious analysis of strassens algorithm in section 5. This paper presents asymptotically optimal algorithms for rectangular matrix transpose, fft, and sorting on computers with multiple levels of caching. We need to start putting this research into practice and reaping the benefits. Our results show, that for the cacheoblivious algorithms used in our casestudy, the extra work incurred by making algorithms cache oblivious is too big, for. While cacheoblivious algorithms are clearly useful, at first its not clear that there even exist any other than simple array iteration. Demaine, cacheoblivious algorithms and data structures, in lecture notes from the eef summer school on massive data sets, brics, university of aarhus, denmark, june 27july 1, 2002 abstract. Jul 14, 2014 traditional blocked algorithms need to be tuned to each processor, but the discovery of cache oblivious algorithms give developers new tools to tackle this emerging challenge. Cacheoblivious algorithms and data structures gerth stolting brodal university of aarhus. Leiserson, harald prokop, and sridhar ramachandran. Rezaul alam chowdhury includes honors thesis results of.
Cacheoblivious algorithms in practice cornell university. The cacheoblivious distribution sort is a comparisonbased sorting algorithm. Cacheoblivious algorithms and data structures erikd. Cacheoblivious algorithms by harald prokop submitted to the department of electrical engineering and computer science on may 21, 1999 in partial ful. Algorithms and experimental evaluation vijaya ramachandran department of computer sciences university of texas at austin dissertation work of former phd student dr. Nevertheless, these algorithms use an optimal amount of work and move data optimally among multiple levels of cache. Ibm austin research laboratory 11501 burnet road, austin, tx 78758 december 7, 2007 abstract we present a technique for analyzing the number of cache misses incurred by multithreaded cache oblivious algorithms on an idealized. We present the recent port to and latest results of cache. It is similar to quicksort, but it is a cacheoblivious algorithm, designed for a setting where the number of elements to sort is too large to fit in a cache where operations are done.
We describe several cacheoblivious algorithms with optimal work, polylogarithmic depth, and sequential cache complexities that match the best. View notes lecture 6 from cs 15853 at carnegie mellon university. Cache oblivious algorithms for computing the triplet distance. Unlike previous optimal algorithms, these algorithms are cache oblivious. An algorithm is cache oblivious if no program variables dependent on hardware configuration. Optimal cacheoblivious algorithms are known for matrix multiplication, matrix transposition. Net, java, lisp, and so on are not cache oblivious. It presents many algorithms and covers them in considerable depth, yet makes their design and analysis accessible to all levels of readers. Our results show, that for the cache oblivious algorithms used in our casestudy, the extra work incurred by making algorithms cache oblivious is too big, for. Cacheoblivious algorithms and data structures springerlink. Cacheoblivious algorithms have the advantage of achieving good sequential cache complexity across all levels of a multilevel cache hierarchy, regardless of the specifics cache size and cache. This paper gives an overview of the results achieved on cacheoblivious algorithms and data structures since the seminal paper by frigo et al.
Topics include memory hierarchy external memory vs. Readme for the source code distribution available with the engineering cacheoblivious sorting algorithms submission to acm jea. Low depth cacheoblivious algorithms harsha vardhan simhadri. Demaine, cacheoblivious algorithms and data structures, in lecture notes from the eef summer school on massive data sets, brics, university of aarhus, denmark, june 27july 1, 2002.
The cache oblivious distribution sort is a comparisonbased sorting algorithm. Cache oblivious and data oblivious sorting and applications th. Typically, a cache oblivious algorithm works by a recursive divide and conquer algorithm, where the problem is divided into smaller and smaller subproblems. We furthermore develop a new optimal cacheoblivious algorithm for a priority deque, based on one of the cacheoblivious priority queues.
The result are algorithms that automatically apply to multilevel memory hierarchies. An algorithm is cache oblivious if no program variables dependent on hardware configuration parameters, such as cache size and cacheline length need. Algorithms developed for these earlier models are perforce cache aware. Today worlds biggest challenge is to speed up the data retrieval from disk, cache oblivious data structures are used for fast retrieval of data from disk. Both things are equally important for singlethreaded algorithms, but especially crucial for parallel algorithms, because available memory bandwidth is usually shared between hardware threads and frequently becomes a bottleneck for scalability. Section 6 discusses a method to speed up searching in balanced binary search trees both in theory and practice. Cacheoblivious sorting algorithms kristoffer vinther. The study of cache oblivious algorithms prepared by jia guo cacheoblivious algorithms by matteo frigo, charles e. What is the relative strength between cacheoblivious algorithms and cache aware algorithms. Cacheoblivious data structures and algorithms for undirected. We furthermore develop a new optimal cache oblivious algorithm for a priority deque, based on one of the cache oblivious priority queues. A recent direction in the design of cacheefficient and diskefficient algorithms and data structures is the notion of cache obliviousness, introduced. Cache oblivious algorithms and data structures erikd.
Equivalently, a single cacheoblivious algorithm is ecient on all memory hierarchies simultaneously. Thankfully, extensive recent research has revealed cacheoblivious data structures and algorithms for a multitude of practical problems. Aside from fast fourier transformation, matrix multiplication, and matrix transposition they presented two optimal sorting algorithms. In computing, a cacheoblivious algorithm or cachetranscendent algorithm is an algorithm. Our sorting algorithm yields the first cacheoblivious algorithms. Abstract this thesis presents cacheoblivious algorithms that use asymptotically optimal. We describe several cacheoblivious algorithms with optimal work, polylogarithmic depth, and. Citeseerx cacheoblivious algorithms extended abstract. We present improved cacheoblivious data structures and algorithms for breadth rst search and the singlesource shortest path problem on undirected graphs with nonnegative edge weights. We describe several cache oblivious algorithms with optimal work, polylogarithmic depth, and sequential cache complexities that match.
The cache complexity of multithreaded cache oblivious. Jun 12, 2007 but as practical as the research is in cache oblivious algorithms, many applications and libraries have yet to take advantage of them. Geometric algorithms for privatecache chip multiprocessors extended abstract. In the 40th annual symposium on foundations of computer science, focs 99, 1718 october, 1999, new york, ny, usa. Unfortunately the best answer i can give is probably as the vm, while not cacheoblivious, will be aware of the cache sizes of the current machine and tuned for common. The idea behind cache oblivious algorithms is efficient usage of processor caches and reduction of memory bandwidth requirements. It is similar to quicksort, but it is a cache oblivious algorithm, designed for a setting where the number of elements to sort is too large to fit in a cache where operations are done. Algorithm, caching, cacheoblivious, fast fourier transform, io com plexity, matrix multiplication, matrix transpose, sorting. Cacheoblivious and dataoblivious sorting and applications. Typically, a cacheoblivious algorithm works by a recursive divide and conquer algorithm, where the problem is divided into smaller and smaller subproblems. In this talk you will learn about the external memory model, the cache oblivious model, and how to use these tools to create faster, scalable algorithms.
In section 4 we choose matrix transposition as an example to learn the practical issues in cache oblivious algorithm design. Our cache oblivious algorithms achieve the same asymptotic optimality. Rezaul alam chowdhury includes honors thesis results of mo chen, haison, david lan roche, lingling tong. Cacheoblivious and dataoblivious sorting and applications th. We present two cache oblivious algorithms that combine the best of both worlds. Exactly two levels of memory therefore an optimal cacheoblivious algorithm incurs an optimal number of cache misses on each level of a multilevel cache with lru replacement. Lesson 34 cacheoblivious algorithms in a cache aware algorithm, the value of l is determined by the cache size. We present improved cache oblivious data structures and algorithms for breadth rst search and the singlesource shortest path problem on undirected graphs with nonnegative edge weights. Cacheoblivious algorithms perform well on a multilevel memory hierarchy without.
790 105 1438 787 1316 479 1173 936 167 949 586 247 1228 1482 713 386 853 1272 63 1207 748 998 1007 579 1305 509 494 1463 3